News and Events
12/1/2008
Researchers Use Affymetrix Technology to Discover Why Some Breast Cancer Patients Resist Tamoxifen
11/26/2008
Affymetrix to Webcast Presentation at Piper Jaffray Healthcare Conference
Molecular Biology Society of Japan & Japanese Biochemical Society
12/09/2008-12/12/2008
Society of Biological Chemists (India) SBC, IITM
12/18/2008-12/20/2008
Scientific Publications
Home > Analysis Center
NetAffx™ Analysis Center
Get unprecedented access to array content.
The NetAffx™ Analysis Center enables researchers to correlate their GeneChip® array results with array design and annotation information.
- NetAffx Query Search transcript clusters and probe sets for a particular term or identifier
- Batch Query Retrieve annotations for a probe list
- Probe Match Find probe sets that identically match a nucleotide sequence(s)
- NetAffx Query - Search probe sets for a term or identifier
- Batch Query - Retrieve annotations for a probe list
- BLAST - Find probe sets that BLAST align to your sequence(s) through BLAST
- Probe Match - Find probes that identically match your sequence(s)
- UCSC Query - Query the UCSC Browser including a custom track for your array of interest.
- NetAffx Query - Search probe sets for a term or identifier
- Batch Query - Retrieve annotations for a probe list
-
LD Mapper -
Evaluate GenomeWideSNP arrays coverage for your list of rsIDs, genes, or genomic regions - UCSC Query - Query the UCSC public genome by position
- SNP Finder - Search for SNPs between microsatellites
Announcements
New releases, product support, applications
For an archival listing of NetAffx Announcements click here
December 1st, 2008
NetAffx Annotation Update 27 Available.
Transcript and Functional annotations for all Affymetrix Catalog arrays updated for 3' IVT Expression, Exon/Gene and Genotyping Arrays.
October 13th, 2008
Welcome to NetAffx 5
Along with a new design, look and style, some of the most requested major NetAffx features updates are included:
- Better workflow navigation. Easier access to the entire range of NetAffx functions and utilities, reliable access to your usual ones.
- Condensed Report mode on the result table.
-
LD Mapper
Estimate the coverage of Affymetrix Genotyping Arrays over lists of rsIDs, genes or genomic regions.
- Pop-up NetAffx help on each page. The Help Button will give you hints on your current page.
- Glossaries define all the annotation data offered (see ivt expression, wt expression, genotyping).
Resources and Help
Selected resources and documentation for getting the most out of the NetAffx™ Analysis Center
NetAffx Help Center
The complete index of documentation available for NetAffx users. Including:
Sources for NetAffx Annotation Updates See documentation for sources and versions of data that went into the annotation updates.
Glossaries of Annotation Terms (3'IVT Expression, WT Expression, Genotyping)
Whitepapers
-
Using the NetAffx XML feed
Use simple scripts to track changes in annotations or library files with the NetAffx XML Feed.
- NetAffx Annotation Whitepaper How does the NetAffx calculate the relationship between the probe set and the current transcript record. (3'IVT)
- Sleuthing with NetAffx Tips and examples on how to unravel difficultprobe sets and SNPs.